PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_4395g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 211aa    MW: 23759.1 Da    PI: 8.4544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_4395g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-0766113735
                   HHHHHHHHHHHHHHHHHHCTSCC.C.....................TT CS
           HLH   7 erErrRRdriNsafeeLrellPk.as..................kaps 35 
                     Er+RR+++N+ + +Lr+++Pk +                   ++++
  MA_4395g0010  66 HTERKRRKKLNDTLYTLRSVVPKiSKtmnpltnancalgkrsieSGDK 113
                   57*********************5547777777777666666664444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-66394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-566119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-66790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDTRLQYAGE IFKSDYYEDQ NNKLWLDNMD EIAGQLDWDD SDPEIIGGSK PATKTNYLQA  60
ASKNLHTERK RRKKLNDTLY TLRSVVPKIS KTMNPLTNAN CALGKRSIES GDKKKSVDKL  120
KHGKVLQVEI CNAGEGGIYH VRIEGKKETG GLVKLTRALE SLPLQIMNSN ICCFDEAIHY  180
SLTVNVKSLG NVGTDKLEDM IRKTTTRDCF E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785710.0EF678571.1 Picea sitchensis clone WS02928_G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-148B8LRN6_PICSI; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.29e-12bHLH family protein